BLASTN 2.2.9 [May-01-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt

           14,049,258 sequences; 36,075,095,184 total letters

Query= 67146006
         (625 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CP000539.1|  Acidovorax sp. JS42, complete genome              720   0.0   
gb|CP002021.1|  Thiomonas intermedia K12, complete genome         347   6e-92 

>gb|CP000539.1| Acidovorax sp. JS42, complete genome
          Length = 4448856

 Score =  720 bits (363), Expect = 0.0
 Identities = 405/411 (98%), Gaps = 6/411 (1%)
 Strand = Plus / Minus

                                                                           
Query: 17      agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgc-gtggtgcgctggcaga 75
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1940214 agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgccgtggtgcgctggcaga 1940155

                                                                           
Query: 76      tggagcaccgccagcatcccgagcagggttaccgctcctgtctgg-cctcatgcgcctgg 134
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1940154 tggagcaccgccagcatcccgagcagggttaccgctcctgtctgggcctcatgcgcctgg 1940095

                                                                           
Query: 135     gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgg-cgcagtcgattcgct 193
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1940094 gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgggcgcagtcgattcgct 1940035

                                                                           
Query: 194     caccgtcctacaagagcatcgcctccatcctgggctgcggcctg-accagcggccgctgg 252
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1940034 caccgtcctacaagagcatcgcctccatcctgggctgcggcctggaccagcggccgctgg 1939975

                                                                           
Query: 253     atgcgccgatggccgcacaggcgagcctgccgctgcacgagaa-gtgcgcgggccgggct 311
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1939974 atgcgccgatggccgcacaggcgagcctgccgctgcacgagaacgtgcgcgggccgggct 1939915

                                                                           
Query: 312     actaccactgaactccaacgtgcaagcaaacctaacaaggaaga-ccatgctcaacgaac 370
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1939914 actaccactgaactccaacgtgcaagcaaacctaacaaggaagaaccatgctcaacgaac 1939855

                                                                  
Query: 371     agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 421
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939854 agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 1939804




 Score =  720 bits (363), Expect = 0.0
 Identities = 405/411 (98%), Gaps = 6/411 (1%)
 Strand = Plus / Minus

                                                                           
Query: 17      agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgc-gtggtgcgctggcaga 75
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1799889 agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgccgtggtgcgctggcaga 1799830

                                                                           
Query: 76      tggagcaccgccagcatcccgagcagggttaccgctcctgtctgg-cctcatgcgcctgg 134
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1799829 tggagcaccgccagcatcccgagcagggttaccgctcctgtctgggcctcatgcgcctgg 1799770

                                                                           
Query: 135     gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgg-cgcagtcgattcgct 193
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1799769 gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgggcgcagtcgattcgct 1799710

                                                                           
Query: 194     caccgtcctacaagagcatcgcctccatcctgggctgcggcctg-accagcggccgctgg 252
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1799709 caccgtcctacaagagcatcgcctccatcctgggctgcggcctggaccagcggccgctgg 1799650

                                                                           
Query: 253     atgcgccgatggccgcacaggcgagcctgccgctgcacgagaa-gtgcgcgggccgggct 311
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1799649 atgcgccgatggccgcacaggcgagcctgccgctgcacgagaacgtgcgcgggccgggct 1799590

                                                                           
Query: 312     actaccactgaactccaacgtgcaagcaaacctaacaaggaaga-ccatgctcaacgaac 370
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1799589 actaccactgaactccaacgtgcaagcaaacctaacaaggaagaaccatgctcaacgaac 1799530

                                                                  
Query: 371     agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 421
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799529 agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 1799479




 Score =  712 bits (359), Expect = 0.0
 Identities = 404/411 (98%), Gaps = 6/411 (1%)
 Strand = Plus / Minus

                                                                           
Query: 17      agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgc-gtggtgcgctggcaga 75
               ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 3789980 agctcatcgcctggggtgagcgcgtgggcgcggccgccgccgccgtggtgcgctggcaga 3789921

                                                                           
Query: 76      tggagcaccgccagcatcccgagcagggttaccgctcctgtctgg-cctcatgcgcctgg 134
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3789920 tggagcaccgccagcatcccgagcagggttaccgctcctgtctgggcctcatgcgcctgg 3789861

                                                                           
Query: 135     gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgg-cgcagtcgattcgct 193
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3789860 gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgggcgcagtcgattcgct 3789801

                                                                           
Query: 194     caccgtcctacaagagcatcgcctccatcctgggctgcggcctg-accagcggccgctgg 252
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3789800 caccgtcctacaagagcatcgcctccatcctgggctgcggcctggaccagcggccgctgg 3789741

                                                                           
Query: 253     atgcgccgatggccgcacaggcgagcctgccgctgcacgagaa-gtgcgcgggccgggct 311
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3789740 atgcgccgatggccgcacaggcgagcctgccgctgcacgagaacgtgcgcgggccgggct 3789681

                                                                           
Query: 312     actaccactgaactccaacgtgcaagcaaacctaacaaggaaga-ccatgctcaacgaac 370
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3789680 actaccactgaactccaacgtgcaagcaaacctaacaaggaagaaccatgctcaacgaac 3789621

                                                                  
Query: 371     agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 421
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3789620 agaccttgaaccaactgcgcgccctgcgcctggacggcatggtggccgccc 3789570



>gb|CP002021.1| Thiomonas intermedia K12, complete genome
          Length = 3396378

 Score =  347 bits (175), Expect = 6e-92
 Identities = 282/311 (90%), Gaps = 5/311 (1%)
 Strand = Plus / Minus

                                                                           
Query: 17      agctcatcgcctggggtgagcgcgtgggcgcggccaccgccgc-gtggtgcgctggcaga 75
               |||||||||||||||| || ||  | || |||||||||||||| ||||||||||||||||
Sbjct: 1689691 agctcatcgcctggggcgaacgaataggtgcggccaccgccgccgtggtgcgctggcaga 1689632

                                                                           
Query: 76      tggagcaccgccagcatcccgagcagggttaccgctcctgtctgg-cctcatgcgcctgg 134
               |||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1689631 tggagcaccgcgcccatcccgagcagggttaccgctcctgtctgggcctcatgcgcctgg 1689572

                                                                           
Query: 135     gccgtgagtacggggctgaccggctggaggccgcctgtgcgc-ggcgcagtcgattcgct 193
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1689571 gccgtgagtacggggctgaccggctggaggccgcctgtgcgcgggcgcagtcgattcgct 1689512

                                                                           
Query: 194     caccgtcctacaagagcatcgcctccatcctgggctgcggcct-gaccagcggccgctgg 252
               |||||||||||||||||||||||||||||||| | || ||||| |||||||| |||||||
Sbjct: 1689511 caccgtcctacaagagcatcgcctccatcctgagttgtggcctggaccagcgcccgctgg 1689452

                                                                           
Query: 253     atgcgccgatggccgcacaggcgagcctgccgctgcacgagaa-gtgcgcgggccgggct 311
               |  | || ||  ||   |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1689451 agacccccatccccatgcaggcgagcctgccgctgcacgagaacgtgcgcggcccgggct 1689392

                          
Query: 312     actaccactga 322
               | |||||||||
Sbjct: 1689391 attaccactga 1689381




 Score =  125 bits (63), Expect = 4e-25
 Identities = 66/67 (98%)
 Strand = Plus / Minus

                                                                           
Query: 355     accatgctcaacgaacagaccttgaaccaactgcgcgccctgcgcctggacggcatggtg 414
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1689334 accatgctcaacgaacacaccttgaaccaactgcgcgccctgcgcctggacggcatggtg 1689275

                      
Query: 415     gccgccc 421
               |||||||
Sbjct: 1689274 gccgccc 1689268




 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 358     atgctcaacgaacagaccttgaaccaactgcgcgccctgcgcctggacggcatggt 413
               |||||||| ||||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct: 1665496 atgctcaatgaacacaccctcaaccaactgcgcgcgctgcgcctggacggcatggt 1665441




 Score = 65.9 bits (33), Expect = 3e-07
 Identities = 88/105 (83%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                           
Query: 17      agctcatcgcctggggtgagcgcgtgggcgcggccaccgccg-cgtggtgcgctggcaga 75
               |||||||||| |||||  ||||| | |||| ||||||||| | |||||||  ||||||  
Sbjct: 1665819 agctcatcgcgtggggccagcgcatcggcgtggccaccgcgggcgtggtgacctggcaac 1665760

                                                            
Query: 76      tggagcaccgccagcatcccgagcagggttaccgctcctgtctgg 120
               ||||| |||||| ||||||||||||||| |||||| |||| ||||
Sbjct: 1665759 tggagaaccgcccgcatcccgagcagggctaccgcgcctgcctgg 1665715




  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt
    Posted date:  May 25, 2011  7:06 PM
  Number of letters in database: 3,999,844,414
  Number of sequences in database:  1,039,336
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.01
    Posted date:  May 25, 2011  7:08 PM
  Number of letters in database: 3,999,991,702
  Number of sequences in database:  665,328
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.02
    Posted date:  May 25, 2011  7:11 PM
  Number of letters in database: 3,999,887,009
  Number of sequences in database:  945,341
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.03
    Posted date:  May 25, 2011  7:14 PM
  Number of letters in database: 3,999,999,199
  Number of sequences in database:  1,198,614
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.04
    Posted date:  May 25, 2011  7:17 PM
  Number of letters in database: 3,999,948,246
  Number of sequences in database:  1,509,219
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.05
    Posted date:  May 25, 2011  7:21 PM
  Number of letters in database: 3,999,959,256
  Number of sequences in database:  2,004,296
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.06
    Posted date:  May 25, 2011  7:25 PM
  Number of letters in database: 3,999,999,873
  Number of sequences in database:  1,904,076
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.07
    Posted date:  May 25, 2011  7:29 PM
  Number of letters in database: 3,999,999,560
  Number of sequences in database:  2,640,268
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.08
    Posted date:  May 25, 2011  7:33 PM
  Number of letters in database: 3,999,999,712
  Number of sequences in database:  2,123,436
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.09
    Posted date:  May 25, 2011  7:34 PM
  Number of letters in database: 75,466,213
  Number of sequences in database:  19,344
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,057,207
Number of Sequences: 14049258
Number of extensions: 10057207
Number of successful extensions: 215145
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 214784
Number of HSP's gapped (non-prelim): 340
length of query: 625
length of database: 36,075,095,184
effective HSP length: 23
effective length of query: 602
effective length of database: 35,751,962,250
effective search space: 21522681274500
effective search space used: 21522681274500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 31 (61.9 bits)