BLASTN 2.2.9 [May-01-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt

           14,049,258 sequences; 36,075,095,184 total letters

Query= 22SNP11321-208i01.p1k
         (1233 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CP000494.1|  Bradyrhizobium sp. BTAi1, complete genome         452   e-123 

>gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome
          Length = 8264687

 Score =  452 bits (228), Expect = e-123
 Identities = 346/376 (92%), Gaps = 7/376 (1%)
 Strand = Plus / Minus

                                                                           
Query: 141     accctgctcatgaccgatggtggcaccgcacgcaccg-cttcccgggcggcaatgcgcgc 199
               |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 3850909 accctgttcatgcccgatggtggcaccgcacgcgccgacttcccgggcggcaatgcgcgc 3850850

                                                                           
Query: 200     acgctgtttcgctcgatccggaccatccttgaaagcc-gccgcccgagacccggctgttc 258
               |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 3850849 acgctgtttcgctcgatccggaccatccttgaaaccctgccgcccgagacccggctgttc 3850790

                                                                           
Query: 259     atgtgtcgtgactacgggccgaaaggacgggccgtgc-ctgggagacgaacgtaagcgac 317
               ||||||| ||||||||||||||| || |||||||||| ||||||||||| ||||||||||
Sbjct: 3850789 atgtgtcatgactacgggccgaacggccgggccgtgcgctgggagacgaccgtaagcgac 3850730

                                                                           
Query: 318     taacgggtgcacgacatccatgtgcgggaccgcatga-cgaggacgcgttcgtcgccctc 376
                ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| |||
Sbjct: 3850729 gaacgggtgcacaacatccatgtgcgggacggcatgaccgaggacgcgttcgtcgcgctc 3850670

                                                                           
Query: 377     cgcgaggcccgcgaccggaggctaggcatgccccgac-gatcgttccctcgctggaggta 435
               ||||||||||||||| ||| ||||||||||||||| | |||| ||||||||||| |||| 
Sbjct: 3850669 cgcgaggcccgcgacaggacgctaggcatgccccgcctgatcattccctcgctgcaggtc 3850610

                                                                           
Query: 436     aacatccggcgccggcccttacccgcctgcggacacg-gcggaaaggtcctcctgaaggc 494
               ||||||| ||||||||| || |||||||||||||||| ||||||||||| ||||||||| 
Sbjct: 3850609 aacatcc-gcgccggccatttcccgcctgcggacacgagcggaaaggtcttcctgaaggt 3850551

                               
Query: 495     gccgatcaacctgctc 510
               |||||||||| |||||
Sbjct: 3850550 gccgatcaacgtgctc 3850535




  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt
    Posted date:  May 25, 2011  7:06 PM
  Number of letters in database: 3,999,844,414
  Number of sequences in database:  1,039,336
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.01
    Posted date:  May 25, 2011  7:08 PM
  Number of letters in database: 3,999,991,702
  Number of sequences in database:  665,328
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.02
    Posted date:  May 25, 2011  7:11 PM
  Number of letters in database: 3,999,887,009
  Number of sequences in database:  945,341
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.03
    Posted date:  May 25, 2011  7:14 PM
  Number of letters in database: 3,999,999,199
  Number of sequences in database:  1,198,614
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.04
    Posted date:  May 25, 2011  7:17 PM
  Number of letters in database: 3,999,948,246
  Number of sequences in database:  1,509,219
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.05
    Posted date:  May 25, 2011  7:21 PM
  Number of letters in database: 3,999,959,256
  Number of sequences in database:  2,004,296
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.06
    Posted date:  May 25, 2011  7:25 PM
  Number of letters in database: 3,999,999,873
  Number of sequences in database:  1,904,076
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.07
    Posted date:  May 25, 2011  7:29 PM
  Number of letters in database: 3,999,999,560
  Number of sequences in database:  2,640,268
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.08
    Posted date:  May 25, 2011  7:33 PM
  Number of letters in database: 3,999,999,712
  Number of sequences in database:  2,123,436
  
  Database: /local/db/repository/ncbi/blast/20110525_173832/nt/nt.09
    Posted date:  May 25, 2011  7:34 PM
  Number of letters in database: 75,466,213
  Number of sequences in database:  19,344
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,437,824
Number of Sequences: 14049258
Number of extensions: 12437824
Number of successful extensions: 282714
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 282587
Number of HSP's gapped (non-prelim): 120
length of query: 1233
length of database: 36,075,095,184
effective HSP length: 23
effective length of query: 1210
effective length of database: 35,751,962,250
effective search space: 43259874322500
effective search space used: 43259874322500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 31 (61.9 bits)