BLASTN 2.2.9 [May-01-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt

           13,657,718 sequences; 35,087,764,730 total letters

Query= 56515442
         (918 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CP001111.1|  Stenotrophomonas maltophilia R551-3, complet...   505   e-139 
emb|AM743169.1|  Stenotrophomonas maltophilia K279a complete...   498   e-137 
gb|AC239727.3|  Homo sapiens BAC clone RP11-723J22 from chro...   472   e-129 
emb|AL022719.1|  Human DNA sequence from clone RP1-231L4 on ...   472   e-129 
emb|CT737394.2|  Pan troglodytes chromosome X clone PTB-130F...   422   e-114 
gb|AC191710.2|  Pan troglodytes BAC clone CH251-607C15 from ...   414   e-112 
emb|CT998536.1|  Pan troglodytes chromosome X clone CH251-41...   414   e-112 

>gb|CP001111.1| Stenotrophomonas maltophilia R551-3, complete genome
          Length = 4573969

 Score =  505 bits (255), Expect = e-139
 Identities = 398/435 (91%), Gaps = 8/435 (1%)
 Strand = Plus / Minus

                                                                          
Query: 29     cagcaggacgctgaccccgcgctggggcgcg-tgta-cgcagcaattcggcgttggtcga 86
              ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 281912 cagcaggacgctgaccccgcgctggggcgcgctgcaacgcagcaattcggcgttggtcga 281853

                                                                          
Query: 87     gtccaccgtccaagccacctgcaggtcgtgta-cacggcctggacgtcggcaggcaggcc 145
              |||||||||||| || |||||||||||||| | ||  | | | ||  |||| ||||| ||
Sbjct: 281852 gtccaccgtccaggctacctgcaggtcgtgcagcagcggcagaaccccggccggcagacc 281793

                                                                          
Query: 146    gccgcggatcgcgtccgggtccagcagatcgac-gggcgggtcaggccatagccctcgcc 204
              | | |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 281792 ggcacggatcgcatccgggtccagcaggtcgaccgggcgggtcaggccatagccttcgcc 281733

                                                                          
Query: 205    ggcgcggccctcgatgtccacaccagcggccc-aagtccttgaatacgcttccaaatggc 263
               |||||||||||||  |||||||| ||||||| ||| |||||||||||||||||||| ||
Sbjct: 281732 agcgcggccctcgacatccacaccggcggccctaagcccttgaatacgcttccaaatagc 281673

                                                                          
Query: 264    cgcccgggtctgacccagctcacgggccaggg-gtcgccggacaggcgaccggcagcgag 322
              |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 281672 cgcccgggtctggcccagctcacgggccagggcgtcgccggacaggcgaccggcagcgag 281613

                                                                          
Query: 323    tttggccagcaattggcgatcgtccacggcag-ttccacgaagtcagaaaggaattatgc 381
              |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 281612 tttggccagcaattggcgatcgtccacggcagcttccacgaagtcaggaaggaattatgc 281553

                                                                          
Query: 382    gggaaagccgccagcgacgcccgccacgct-ggttccgcaggggcttccaacggggcggc 440
              |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct: 281552 gggaaagccgccagcgacgcccgccacgctgggttccgcaggggcttccaactgggcgcc 281493

                             
Query: 441    gagttcgggctagaa 455
              | |||||||||||||
Sbjct: 281492 gggttcgggctagaa 281478



>emb|AM743169.1| Stenotrophomonas maltophilia K279a complete genome, strain K279a
          Length = 4851126

 Score =  498 bits (251), Expect = e-137
 Identities = 397/435 (91%), Gaps = 8/435 (1%)
 Strand = Plus / Minus

                                                                          
Query: 29     cagcaggacgctgaccccgcgctggggcgcg-tgtac-gcagcaattcggcgttggtcga 86
              |||||| ||||| |||||||||||||||||| || || ||||||||||||| ||||||||
Sbjct: 297503 cagcagcacgctcaccccgcgctggggcgcgctgcaccgcagcaattcggcattggtcga 297444

                                                                          
Query: 87     gtccaccgtccaagccacctgcaggtcgtgta-cacggcctggacgtcggcaggcaggcc 145
              |||||||||||| |||||||| |||||||| | ||  |||||| ||||| | ||||||||
Sbjct: 297443 gtccaccgtccaggccacctggaggtcgtgcagcagcgcctgggcgtcgccgggcaggcc 297384

                                                                          
Query: 146    gccgcggatcgcgtccgggtccagcagatcgac-gggcgggtcaggccatagccctcgcc 204
              | ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 297383 ggcgcggatcgcggccgggtccagcaggtcgaccgggcgggtcaggccatagccctcacc 297324

                                                                          
Query: 205    ggcgcggccctcgatgtccacaccagcggccc-aagtccttgaatacgcttccaaatggc 263
               || || ||||||||||| ||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 297323 tgcacgcccctcgatgtctacaccggcggctctaagtccttgaatacgcttccaaatggc 297264

                                                                          
Query: 264    cgcccgggtctgacccagctcacgggccaggg-gtcgccggacaggcgaccggcagcgag 322
              |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 297263 cgcccgggtctggcccagctcacgggccagggcgtcgccggagaggcgaccggcagcgag 297204

                                                                          
Query: 323    tttggccagcaattggcgatcgtccacggcag-ttccacgaagtcagaaaggaattatgc 381
              |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 297203 tttggccagcaattggcggtcgtccacggcagcttccacgaagtcaggaaggaattatgc 297144

                                                                          
Query: 382    gggaaagccgccagcgacgcccgccacgct-ggttccgcaggggcttccaacggggcggc 440
              |||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |
Sbjct: 297143 gggaaagccgccagcggcgcccgccacgctgggttccgcgggggcttccaacggggcgcc 297084

                             
Query: 441    gagttcgggctagaa 455
              | |||||||||||||
Sbjct: 297083 gggttcgggctagaa 297069



>gb|AC239727.3| Homo sapiens BAC clone RP11-723J22 from chromosome x, complete sequence
          Length = 162429

 Score =  472 bits (238), Expect = e-129
 Identities = 356/376 (94%), Gaps = 17/376 (4%)
 Strand = Plus / Minus

                                                                          
Query: 454    aagagagcttaagtatgtta-gtcaagcgtatatatattttcactccttgtgaagaactt 512
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 148869 aagagagcttaagtatgttaagtcaagcgtatatatattttcactccttgtgaagaactt 148810

                                                                          
Query: 513    ttttcttttactatctttaa-caaatagttacatttggacttgattccaagcaggtgagt 571
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 148809 ttttcttttactatctttaaacaaatagttacatttggacttgattccaagcaggtgagt 148750

                                                                          
Query: 572    tcattttattcttctttac-acagatatctaaacccgtcagtattaactatagtgctgag 630
              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 148749 tcattttattcttctttacaacagatatctaaacccgtcagtattaactatagtgctgag 148690

                                                                          
Query: 631    tatcctctgaggaaaagag-tcaatgcatctgcagttacctgag-aaaataat-aatata 687
              ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 148689 tatcctctgaggaaaagagttcaatgcatctgcagttacctgagaaaaataataaatata 148630

                                                                          
Query: 688    ttaataagattgtggaaat--aacaattctccaaggtgataaaaat-aaaatgaaa-ttc 743
              |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| |||
Sbjct: 148629 ttaataagattgtggaaataaaacaattctccaaggtgataaaaataaaaatgaaatttc 148570

                                                                          
Query: 744    acttaatc-aaaattattg-atact--atggtgtctttta-tgtgctaggtca-ttggga 797
              |||||||| |||||||||| |||||  |||   ||||||| |||||||||||| ||||||
Sbjct: 148569 acttaatcaaaaattattgtatacttaatgtgttcttttattgtgctaggtcatttggga 148510

                              
Query: 798    ggt-ataaattaaatt 812
              ||| ||||||||||||
Sbjct: 148509 ggtaataaattaaatt 148494



>emb|AL022719.1| Human DNA sequence from clone RP1-231L4 on chromosome Xq27.1-27.3
            Contains part of a novel gene and a piggyBac transposable
            element derived 4 PGBD4) pseudogene, complete sequence
          Length = 151519

 Score =  472 bits (238), Expect = e-129
 Identities = 356/376 (94%), Gaps = 17/376 (4%)
 Strand = Plus / Plus

                                                                        
Query: 454  aagagagcttaagtatgtta-gtcaagcgtatatatattttcactccttgtgaagaactt 512
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 aagagagcttaagtatgttaagtcaagcgtatatatattttcactccttgtgaagaactt 2120

                                                                        
Query: 513  ttttcttttactatctttaa-caaatagttacatttggacttgattccaagcaggtgagt 571
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 ttttcttttactatctttaaacaaatagttacatttggacttgattccaagcaggtgagt 2180

                                                                        
Query: 572  tcattttattcttctttac-acagatatctaaacccgtcagtattaactatagtgctgag 630
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 tcattttattcttctttacaacagatatctaaacccgtcagtattaactatagtgctgag 2240

                                                                        
Query: 631  tatcctctgaggaaaagag-tcaatgcatctgcagttacctgag-aaaataat-aatata 687
            ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 2241 tatcctctgaggaaaagagttcaatgcatctgcagttacctgagaaaaataataaatata 2300

                                                                        
Query: 688  ttaataagattgtggaaat--aacaattctccaaggtgataaaaat-aaaatgaaa-ttc 743
            |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| |||
Sbjct: 2301 ttaataagattgtggaaataaaacaattctccaaggtgataaaaataaaaatgaaatttc 2360

                                                                        
Query: 744  acttaatc-aaaattattg-atact--atggtgtctttta-tgtgctaggtca-ttggga 797
            |||||||| |||||||||| |||||  |||   ||||||| |||||||||||| ||||||
Sbjct: 2361 acttaatcaaaaattattgtatacttaatgtgttcttttattgtgctaggtcatttggga 2420

                            
Query: 798  ggt-ataaattaaatt 812
            ||| ||||||||||||
Sbjct: 2421 ggtaataaattaaatt 2436



>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete sequence
          Length = 188890

 Score =  422 bits (213), Expect = e-114
 Identities = 354/382 (92%), Gaps = 23/382 (6%)
 Strand = Plus / Plus

                                                                          
Query: 454    aagagagcttaagtatgttag-tcaagcgtatatatattttcactccttgtgaagaactt 512
              ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 149463 aagagagcttaagtatgttaaatcaagcgtatatatattttcactccttgtgaagaactt 149522

                                                                          
Query: 513    ttttcttttactatctttaa-caaatagttacatttggacttgattccaagcaggtgagt 571
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 149523 ttttcttttactatctttaaacaaatagttacatttggacttgattccaagcaggtgagt 149582

                                                                          
Query: 572    tcattttattcttctttac-acagatatctaaacccgtcagtattaactatagtgctgag 630
              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 149583 tcattttattcttctttacaacagatatctaaacccgtcagtattaactatagtgctgag 149642

                                                                          
Query: 631    tatcctctgaggaaaagag-tcaatgcatctgcagttacctgag-aaaataat-aatata 687
              ||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 149643 tatcctctgaggaaaagagttcaatgcatctgcagttatctgagaaaaataataaatata 149702

                                                                          
Query: 688    t------taataagattgtggaaat--aacaattctccaaggtgataaaaat-aaaatga 738
              |      ||||||||||||||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 149703 ttaatactaataagattgtggaaataaaacaattctccaaggtgataaaaataaaaatga 149762

                                                                          
Query: 739    aa-ttcacttaatc-aaaattattg-atact--atggtgtctttta-tgtgctaggtca- 791
              || ||||||||||| |||||||||| |||||  |||   ||||||| |||||||||||| 
Sbjct: 149763 aatttcacttaatcaaaaattattgtatacttaatgtgttcttttattgtgctaggtcat 149822

                                    
Query: 792    ttgggaggt-ataaattaaatt 812
              ||||||||| ||||||||||||
Sbjct: 149823 ttgggaggtaataaattaaatt 149844



>gb|AC191710.2| Pan troglodytes BAC clone CH251-607C15 from chromosome x, complete
              sequence
          Length = 185442

 Score =  414 bits (209), Expect = e-112
 Identities = 353/382 (92%), Gaps = 23/382 (6%)
 Strand = Plus / Plus

                                                                          
Query: 454    aagagagcttaagtatgttag-tcaagcgtatatatattttcactccttgtgaagaactt 512
              ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |
Sbjct: 109996 aagagagcttaagtatgttaaatcaagcgtatatatattttcactccttgtgaagaacgt 110055

                                                                          
Query: 513    ttttcttttactatctttaa-caaatagttacatttggacttgattccaagcaggtgagt 571
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 110056 ttttcttttactatctttaaacaaatagttacatttggacttgattccaagcaggtgagt 110115

                                                                          
Query: 572    tcattttattcttctttac-acagatatctaaacccgtcagtattaactatagtgctgag 630
              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 110116 tcattttattcttctttacaacagatatctaaacccgtcagtattaactatagtgctgag 110175

                                                                          
Query: 631    tatcctctgaggaaaagag-tcaatgcatctgcagttacctgag-aaaataat-aatata 687
              ||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 110176 tatcctctgaggaaaagagttcaatgcatctgcagttatctgagaaaaataataaatata 110235

                                                                          
Query: 688    t------taataagattgtggaaat--aacaattctccaaggtgataaaaat-aaaatga 738
              |      ||||||||||||||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 110236 ttaatactaataagattgtggaaataaaacaattctccaaggtgataaaaataaaaatga 110295

                                                                          
Query: 739    aa-ttcacttaatc-aaaattattg-atact--atggtgtctttta-tgtgctaggtca- 791
              || ||||||||||| |||||||||| |||||  |||   ||||||| |||||||||||| 
Sbjct: 110296 aatttcacttaatcaaaaattattgtatacttaatgtgttcttttattgtgctaggtcat 110355

                                    
Query: 792    ttgggaggt-ataaattaaatt 812
              ||||||||| ||||||||||||
Sbjct: 110356 ttgggaggtaataaattaaatt 110377



>emb|CT998536.1| Pan troglodytes chromosome X clone CH251-41D18 map Xq28, complete
              sequence
          Length = 192200

 Score =  414 bits (209), Expect = e-112
 Identities = 353/382 (92%), Gaps = 23/382 (6%)
 Strand = Plus / Plus

                                                                          
Query: 454    aagagagcttaagtatgttag-tcaagcgtatatatattttcactccttgtgaagaactt 512
              ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |
Sbjct: 134192 aagagagcttaagtatgttaaatcaagcgtatatatattttcactccttgtgaagaacgt 134251

                                                                          
Query: 513    ttttcttttactatctttaa-caaatagttacatttggacttgattccaagcaggtgagt 571
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 134252 ttttcttttactatctttaaacaaatagttacatttggacttgattccaagcaggtgagt 134311

                                                                          
Query: 572    tcattttattcttctttac-acagatatctaaacccgtcagtattaactatagtgctgag 630
              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134312 tcattttattcttctttacaacagatatctaaacccgtcagtattaactatagtgctgag 134371

                                                                          
Query: 631    tatcctctgaggaaaagag-tcaatgcatctgcagttacctgag-aaaataat-aatata 687
              ||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 134372 tatcctctgaggaaaagagttcaatgcatctgcagttatctgagaaaaataataaatata 134431

                                                                          
Query: 688    t------taataagattgtggaaat--aacaattctccaaggtgataaaaat-aaaatga 738
              |      ||||||||||||||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 134432 ttaatactaataagattgtggaaataaaacaattctccaaggtgataaaaataaaaatga 134491

                                                                          
Query: 739    aa-ttcacttaatc-aaaattattg-atact--atggtgtctttta-tgtgctaggtca- 791
              || ||||||||||| |||||||||| |||||  |||   ||||||| |||||||||||| 
Sbjct: 134492 aatttcacttaatcaaaaattattgtatacttaatgtgttcttttattgtgctaggtcat 134551

                                    
Query: 792    ttgggaggt-ataaattaaatt 812
              ||||||||| ||||||||||||
Sbjct: 134552 ttgggaggtaataaattaaatt 134573




  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt
    Posted date:  Jun 27, 2011  9:33 PM
  Number of letters in database: 3,999,998,151
  Number of sequences in database:  1,039,214
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.01
    Posted date:  Jun 27, 2011  9:35 PM
  Number of letters in database: 3,999,910,134
  Number of sequences in database:  665,043
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.02
    Posted date:  Jun 27, 2011  9:38 PM
  Number of letters in database: 3,999,999,017
  Number of sequences in database:  945,100
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.03
    Posted date:  Jun 27, 2011  9:41 PM
  Number of letters in database: 3,999,999,806
  Number of sequences in database:  1,199,409
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.04
    Posted date:  Jun 27, 2011  9:44 PM
  Number of letters in database: 3,999,996,849
  Number of sequences in database:  1,509,457
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.05
    Posted date:  Jun 27, 2011  9:47 PM
  Number of letters in database: 3,999,696,385
  Number of sequences in database:  1,990,950
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.06
    Posted date:  Jun 27, 2011  9:51 PM
  Number of letters in database: 3,999,999,545
  Number of sequences in database:  2,018,022
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.07
    Posted date:  Jun 27, 2011  9:55 PM
  Number of letters in database: 3,999,992,015
  Number of sequences in database:  2,541,795
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.08
    Posted date:  Jun 27, 2011  9:58 PM
  Number of letters in database: 3,088,172,828
  Number of sequences in database:  1,748,728
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,674,358
Number of Sequences: 13657718
Number of extensions: 22674358
Number of successful extensions: 552249
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 551974
Number of HSP's gapped (non-prelim): 230
length of query: 918
length of database: 35,087,764,730
effective HSP length: 23
effective length of query: 895
effective length of database: 34,773,637,216
effective search space: 31122405308320
effective search space used: 31122405308320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 31 (61.9 bits)