BLAST Search Results

BLASTN 2.2.9 [May-01-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt

           13,657,718 sequences; 35,087,764,730 total letters



Query= 73023680
         (813 letters)

Distribution of 7 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC076972.16|  Homo sapiens 12 BAC RP11-624G19 (Roswell Pa...   797   0.0   
emb|AM902716.1|  Bordetella petrii strain DSM 12804, complet...   359   2e-95 
gb|CP000352.1|  Cupriavidus metallidurans CH34, complete genome    86   4e-13 
gb|AF440523.1|  Pseudomonas aeruginosa strain C genomic sequ...    86   4e-13 
gb|CP001281.2|  Thauera sp. MZ1T, complete genome                  72   6e-09 
gb|CP001339.1|  Thioalkalivibrio sulfidophilus HL-EbGr7, com...    72   6e-09 
gb|CP001644.1|  Ralstonia pickettii 12D chromosome 1, comple...    64   2e-06 

>gb|AC076972.16| Homo sapiens 12 BAC RP11-624G19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161540

 Score =  797 bits (402), Expect = 0.0
 Identities = 525/551 (95%), Gaps = 13/551 (2%)
 Strand = Plus / Plus

                                                                          
Query: 272    gtaataaaaaagcaaaagccaccc-gataaagaaaacaatgccttacgatagtgggtaaa 330
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 130884 gtaataaaaaagcaaaagccaccctgataaagaaaacaatgccttacgatagtgggtaaa 130943

                                                                          
Query: 331    tttataatttataggagcctttac-tcctcctatttgatcttcataaattcgtagaattg 389
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 130944 tttataatttataggagcctttacatcctcctatttgatcttcataaattcgtagaattg 131003

                                                                          
Query: 390    aggacaggcattattactttattt-ataaatgagaaaactaaagcttggaaaattttgta 448
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 131004 aggacaggcattattactttattttataaatgagaaaactaaagcttggaaaattttgta 131063

                                                                          
Query: 449    ctaaaagttgatgaaatagggaag-atgaaaaatgctacctgaaaaatattagagacact 507
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 131064 ctaaaagttgatgaaatagggaagtatgaaaaatgctacctgaaaaatattagagacact 131123

                                                                          
Query: 508    ccaatgacttgaagaaagctttaa-ttatattccttacaaatgaattattcttctgtctt 566
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 131124 ccaatgacttgaagaaagctttaatttatattccttacaaatgaattattcttctgtctt 131183

                                                                          
Query: 567    cgtagaaacagatttccttcct-aaggtctattacagccttcatgtaannnnnnnctagc 625
               ||||||||||||||||||||| |||||||||||||||||||||||||       |||||
Sbjct: 131184 ggtagaaacagatttccttcctaaaggtctattacagccttcatgtaatttttttctagc 131243

                                                                          
Query: 626    caggctggaatcactttcaatctt-ctcaagtgaagggaacctcttggaggcttagcagc 684
              || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 131244 ca-gctggaatcactttcaatcttgctcaagtgaagggaacctcttggaggcttagcagc 131302

                                                                          
Query: 685    accttctgcagcaatgtggctc-ttctacgagtacactctcaattattc-agat-acaca 741
              |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 131303 accttctgcagcaatgtggctctttctacgagtacactctcaattattcaagataacaca 131362

                                                                          
Query: 742    ggaagg-cttgagatagattactcc-aaggcagcagaaacaaataaccagttagttggaa 799
              |||||| || ||||||||||||||| |||||||||||||||||| | |||||||||| | 
Sbjct: 131363 ggaaggcctggagatagattactccaaaggcagcagaaacaaattaacagttagttgaat 131422

                         
Query: 800    tagataaactt 810
              |||||||||||
Sbjct: 131423 tagataaactt 131433



>emb|AM902716.1| Bordetella petrii strain DSM 12804, complete genome
          Length = 5287950

 Score =  359 bits (181), Expect = 2e-95
 Identities = 245/261 (93%), Gaps = 4/261 (1%)
 Strand = Plus / Minus

                                                                           
Query: 16      tgctatttcttctttccgggtgtcgttgcccacttcatggcatt-ccgaacgccaggtcg 74
               |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1153680 tgctatttcttcttcccgggtgtcgttgcccacttcatggcattgccgaacgcaaggtcg 1153621

                                                                           
Query: 75      ccggccttgccgcctgcggcccgggcaccagcggtgcccatcgt-aggccctgtaacagg 133
               |||||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||||| 
Sbjct: 1153620 ccggccttaccgcctgcggccctggcaccagcggtccccatcgtgaggccctgcaacaga 1153561

                                                                           
Query: 134     ttcccgacagcgtagccagcccatcccaaggctgtcacccagaa-aggggcagtacgatg 192
               || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1153560 ttgccgacagcgtagccggcccatcccaaggcagtcacccagaacaggggcagtacgatg 1153501

                                                                           
Query: 193     aacattgttgccatcacgaagttcagcaacatatcgccgaaggc-ttgttgagccccatg 251
               ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1153500 aacatcgttgccatcacgaagttcagcaacatatcgccgaaggcattgttgagccccatg 1153441

                                    
Query: 252     acggggtcgaagttcgagtgg 272
               ||||| |||||||||||||||
Sbjct: 1153440 acgggatcgaagttcgagtgg 1153420



>gb|CP000352.1| Cupriavidus metallidurans CH34, complete genome
          Length = 3928089

 Score = 85.7 bits (43), Expect = 4e-13
 Identities = 108/127 (85%), Gaps = 2/127 (1%)
 Strand = Plus / Minus

                                                                           
Query: 143     gcgtagccagcccatcccaaggctgtcacccagaa-aggggcagtacgatgaacattgtt 201
               |||||||| |||||||||||||| || |||||||| | |||||| ||||||||||| || 
Sbjct: 2573331 gcgtagcccgcccatcccaaggcggttacccagaacaagggcagcacgatgaacatcgtc 2573272

                                                                           
Query: 202     gccatcacgaagttcagcaacatatcgccgaaggc-ttgttgagccccatgacggggtcg 260
               ||||| ||||| |||| || ||| || |||||||| |||||||| |||||||| || |||
Sbjct: 2573271 gccatgacgaaattcaacagcatgtctccgaaggcattgttgaggcccatgaccggatcg 2573212

                      
Query: 261     aagttcg 267
               || ||||
Sbjct: 2573211 aaattcg 2573205



>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C)
          Length = 158230

 Score = 85.7 bits (43), Expect = 4e-13
 Identities = 108/127 (85%), Gaps = 2/127 (1%)
 Strand = Plus / Plus

                                                                         
Query: 143   gcgtagccagcccatcccaaggctgtcacccagaa-aggggcagtacgatgaacattgtt 201
             |||||||| |||||||||||||| || |||||||| | |||||| ||||||||||| || 
Sbjct: 67539 gcgtagcccgcccatcccaaggcggttacccagaacaagggcagcacgatgaacatcgtc 67598

                                                                         
Query: 202   gccatcacgaagttcagcaacatatcgccgaaggc-ttgttgagccccatgacggggtcg 260
             ||||| ||||| |||| || ||| || |||||||| |||||||| |||||||| || |||
Sbjct: 67599 gccatgacgaaattcaacagcatgtctccgaaggcattgttgaggcccatgaccggatcg 67658

                    
Query: 261   aagttcg 267
             || ||||
Sbjct: 67659 aaattcg 67665



>gb|CP001281.2| Thauera sp. MZ1T, complete genome
          Length = 4496212

 Score = 71.9 bits (36), Expect = 6e-09
 Identities = 79/92 (85%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                           
Query: 181     ggcagtacgatgaacattgttgccatcacgaagttcagcaacatatcgccgaaggc-ttg 239
               |||||||||| ||||||||| ||||| ||||||||||||| ||| || |||||||| |||
Sbjct: 1032265 ggcagtacgaggaacattgtcgccatgacgaagttcagcagcatgtccccgaaggcgttg 1032324

                                               
Query: 240     ttgagccccatgacggggtcgaagttcgagtg 271
               || || || || | ||| ||||||||||||||
Sbjct: 1032325 ttcagaccgatcaagggatcgaagttcgagtg 1032356



>gb|CP001339.1| Thioalkalivibrio sulfidophilus HL-EbGr7, complete genome
          Length = 3464554

 Score = 71.9 bits (36), Expect = 6e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                               
Query: 189     gatgaacattgttgccatcacgaagttcagcaacatatcgccgaaggc 236
               ||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct: 3007462 gatgaacatcgtcgccatcacgaagttcaacaacatatcgccgaaggc 3007415



>gb|CP001644.1| Ralstonia pickettii 12D chromosome 1, complete sequence
          Length = 3647724

 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 181    ggcagtacgatgaacattgttgccatcacgaagttcagcaacatatcgccgaaggc 236
              ||||| ||||||||||| || ||||| ||||||||||||| ||| |||||||||||
Sbjct: 722374 ggcagcacgatgaacatcgtcgccatgacgaagttcagcagcatgtcgccgaaggc 722319




  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt
    Posted date:  Jun 27, 2011  9:33 PM
  Number of letters in database: 3,999,998,151
  Number of sequences in database:  1,039,214
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.01
    Posted date:  Jun 27, 2011  9:35 PM
  Number of letters in database: 3,999,910,134
  Number of sequences in database:  665,043
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.02
    Posted date:  Jun 27, 2011  9:38 PM
  Number of letters in database: 3,999,999,017
  Number of sequences in database:  945,100
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.03
    Posted date:  Jun 27, 2011  9:41 PM
  Number of letters in database: 3,999,999,806
  Number of sequences in database:  1,199,409
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.04
    Posted date:  Jun 27, 2011  9:44 PM
  Number of letters in database: 3,999,996,849
  Number of sequences in database:  1,509,457
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.05
    Posted date:  Jun 27, 2011  9:47 PM
  Number of letters in database: 3,999,696,385
  Number of sequences in database:  1,990,950
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.06
    Posted date:  Jun 27, 2011  9:51 PM
  Number of letters in database: 3,999,999,545
  Number of sequences in database:  2,018,022
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.07
    Posted date:  Jun 27, 2011  9:55 PM
  Number of letters in database: 3,999,992,015
  Number of sequences in database:  2,541,795
  
  Database: /local/db/repository/ncbi/blast/20110627_170419/nt/nt.08
    Posted date:  Jun 27, 2011  9:58 PM
  Number of letters in database: 3,088,172,828
  Number of sequences in database:  1,748,728
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,739,649
Number of Sequences: 13657718
Number of extensions: 18739649
Number of successful extensions: 372945
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 372724
Number of HSP's gapped (non-prelim): 205
length of query: 813
length of database: 35,087,764,730
effective HSP length: 23
effective length of query: 790
effective length of database: 34,773,637,216
effective search space: 27471173400640
effective search space used: 27471173400640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 31 (61.9 bits)